species:   Scscl
pid:       PID1677
parent:    Ssc-milR-153
paralog:   
locus:     NW_001820830.1:1890727-1890796
matures:   ['UGGGACUGCCCUUGUGAUCUUG', 'UGCAACAAAGCGUCUCCGUU']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820830.1:1890727-1890796

5 out of bounds
7 alignments
7 proper strand
7 stranded perfect matches

***********************                         **********************
CUGGGACUGCCCUUGUGAUCUUGAGCCGAAGCAGAAAGGGGCUAGGCUCUUGCAACAAAGCGUCUCCGUU
.((((((.((..((((...(..(((((..(((........))).)))))..)..)))).))))).)))..
-UGGGACUGCCCUUGUGAUCUUG----------------------------------------------- l=22 a=3 c
--------------------------------------------------UGCAACAAAGCGUCUCCGUU l=20 a=0 c*
-UGGGACUGCCCUUGUGAUCUUG----------------------------------------------- l=22 a=3 ma
--------------------------------------------------UGCAACAAAGCGUCUCCGUU l=20 a=0 ma*

-UGGGACUGCCCUUGUGAUCUUG----------------------------------------------- l=22 a=3 (c,ma)
------------UUGUGAUCUUGAGCCGAAGCAG------------------------------------ l=22 a=1 
-------------UGUGAUCUUGAGCCGAAGCAGA----------------------------------- l=22 a=1 
---------------------UGAGCCGAAGCAGAAAGGG------------------------------ l=19 a=1 
---------------------UGAGCCGAAGCAGAAAGGGG----------------------------- l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
